MS049 hydrochloride is primarily utilized in research settings to study its effects on specific biological pathways. It acts as a potent and selective inhibitor of certain enzymes, making it valuable for investigating cellular processes and signaling mechanisms. Researchers employ this compound to explore its potential in modulating protein interactions, which can provide insights into disease mechanisms. Its application extends to preclinical studies aimed at understanding its therapeutic potential in conditions where targeted enzyme inhibition may be beneficial. Additionally, MS049 hydrochloride is used in biochemical assays to assess its efficacy and selectivity, contributing to the development of novel pharmacological agents.