Methyl 5-amino-2-cyanobenzoate is primarily used as an intermediate in the synthesis of various pharmaceuticals and organic compounds. Its structure, featuring both amino and cyano groups, makes it a versatile building block in medicinal chemistry. It is often employed in the development of drugs targeting specific biological pathways, particularly in the creation of inhibitors or modulators for enzymes and receptors. Additionally, it finds application in the production of dyes and pigments, where its functional groups contribute to the formation of complex colorants. Its role in organic synthesis also extends to the preparation of agrochemicals, where it aids in the development of compounds with pesticidal or herbicidal properties.